Publication Date: Jun 8, 2017
About Advanced Molecular Detection Clips
Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. Special emphasis is given to the use of next-generation genetic sequencing in infectious disease public health surveillance, investigation, and development of new diagnostics and interventions. The collection is not comprehensive but aims to capture highlights, while surveying a wide range of topics. CDC-authored articles are flagged. Items marked I&E address aspects of implementation or evaluation in clinical or public health practice.
Advanced Molecular Detection Clips Content
NEWS
- Sequencing Increasingly Enables Viral Surveillance During Outbreaks, According to ASM Speakers
Curtin C. GenomeWeb, Jun 4, 2017. - Genomic Analysis Uncovers Population Restructuring Among Hospital Pathogen Isolates
Curtin C. GenomeWeb, Jun 3, 2017. - At ASM, Microbiome Data Initiative Takes Shape as Organizers Seek Community Input
Curtin C. GenomeWeb, Jun 5, 2017. - Legionnaires’ Disease Bacteria Found in Flint Residents’ Water
Mika A. The Scientist, Jun 7, 2017. - Plumbing In Hospitals And Nursing Homes Can Spread Legionnaires' Disease
Stein R. NPR, Jun 6, 2017. - Genetic Lessons Of Wisconsin's Elizabethkingia Outbreak
Gordon S. WisContext, Jun 6, 2017. - Source code: Putting metagenomics to the test in the clinic.
Arnold Carrie et al. Nature medicine 2017 Jun (6) 645-648 - NIAID-Sponsored Trial of Experimental Chikungunya Vaccine Begins
NIAID, Jun 5, 2017. - Next-generation sequencing test identifies pathogens quickly in stem cell transplant patients
Healio, Jun 4, 2017.
EVENTS / TRAINING / WEB RESOURCES
- Precision Public Health: Harnessing the Power of the Human Microbiome
(blog post) Halpin AL. Office of Public Health Genomics, CSELS, CDC. Jun 7, 2017.
CONCEPTS / COMMENTS
- Preprinting microbiology.
Schloss PD. mBio 8:e00438-17. May 23, 2017. - Opinion: The Virome and the Anti-vaccination Debate
Guttinger S. The Scientist, Jun 6, 2017.
METHODS / TOOLS
- Efficient detection of viral transmissions with Next-Generation Sequencing data.
Rytsareva Inna et al. BMC genomics 2017 May (Suppl 4) 372
- A Critical Review on the Use of Support Values in Tree Viewers and Bioinformatics Toolkits.
Czech Lucas et al. Molecular biology and evolution 2017 Jun (6) 1535-1542 - Neisseria genomics: current status and future perspectives.
Harrison Odile B et al. Pathogens and disease 2017 Jun - Food Safety in the Age of Next Generation Sequencing, Bioinformatics, and Open Data Access.
Taboada Eduardo N et al. Frontiers in microbiology 2017 909 - Disease burden and antimicrobial resistance of invasive group B streptococcus among infants in China: a protocol for a national prospective observational study.
Ji Wenjing et al. BMC infectious diseases 2017 May (1) 377 - Meta-analysis To Define a Core Microbiota in the Swine Gut.
Holman Devin B et al. mSystems (3)
EVOLUTION / ECOLOGY / POPULATIONS
- Molecular epidemiology of Staphylococcus aureus bacteremia in a single large Minnesota medical center in 2015 as assessed using MLST, core genome MLST and spa typing.
Park Kyung-Hwa et al. PloS one 2017 (6) e0179003 - Genome-wide-analyses of Listeria monocytogenes from food-processing plants reveals clonal diversity and dates the emergence of persisting sequence types.
Knudsen Gitte M et al. Environmental microbiology reports 2017 Jun - Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion.
Hadfield James et al. Genome research 2017 Jun - Identification and comparative analysis of hepatitis B virus genotype D/E recombinants in Africa.
Boyce Ceejay L et al. Virus genes 2017 May - Genome analysis of yellow fever virus of the ongoing outbreak in Brazil reveals polymorphisms.
Bonaldo Myrna C et al. Memorias do Instituto Oswaldo Cruz 2017 Jun (6) 447-451 - A unique second-generation recombinant form of HIV-1 identified among men who have sex with men（MSM）in Beijing, China.
Li Xue et al. AIDS research and human retroviruses 2017 Jun - Wide variety of recombinant strains of norovirus GII in pediatric patients hospitalized with acute gastroenteritis in Thailand during 2005 to 2015.
Supadej Kanittapon et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Aug 44-51 - New mitogenome and nuclear evidence on the phylogeny and taxonomy of the highly zoonotic tapeworm Echinococcus granulosus sensu stricto.
Kinkar Liina et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Aug 52-58
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
- Genomics of antibiotic-resistance prediction in Pseudomonas aeruginosa.
Jeukens Julie et al. Annals of the New York Academy of Sciences 2017 Jun - Defining the ABC of gene essentiality in streptococci.
Charbonneau Amelia R L et al. BMC genomics 2017 May (1) 426 - Prevalence of colistin resistance gene (mcr-1) containing Enterobacteriaceae in feces of patients attending a tertiary care hospital and detection of a mcr-1 containing, colistin susceptible E. coli.
Terveer Elisabeth M et al. PloS one 2017 (6) e0178598 - Diffusion of clindamycin-resistant and erythromycin-resistant methicillin-susceptible Staphylococcus aureus (MSSA), potential ST398, in United States Veterans Health Administration Hospitals, 2003-2014
Carrel M, et al. Antimicrob Resist Infect Control, Jun 5, 2017. - Genomic Analysis of Multidrug-Resistant Escherichia coli from North Carolina Community Hospitals: Ongoing Circulation of CTX-M-Producing ST131-H30Rx and ST131-H30R1 Strains.
Kanamori Hajime et al. Antimicrobial agents and chemotherapy 2017 Jun - Surveillance for sulfadoxine-pyrimethamine resistant malaria parasites in the Lake and Southern Zones, Tanzania, using pooling and next-generation sequencing.
Ngondi Jeremiah M et al. Malaria journal 2017 Jun (1) 236 - Prevalence of Hepatitis B Antiviral Drug Resistance Variants in North American Patients with Chronic Hepatitis B Not Receiving Antiviral Treatment.
Lok Anna S et al. Journal of viral hepatitis 2017 Jun - Genetic analyses of HIV env associated with uveitis in antiretroviral-naïve individuals.
Williams-Wietzikoski Corey A et al. AIDS (London, England) 2017 Jun - Mycobacterium tuberculosis Whole Genome Sequences From Southern India Suggest Novel Resistance Mechanisms and the Need for Region-Specific Diagnostics.
Manson Abigail L et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Jun (11) 1494-1501 - Frequency of respiratory virus infections and next-generation analysis of influenza A/H1N1pdm09 dynamics in the lower respiratory tract of patients admitted to the ICU.
Piralla Antonio et al. PloS one 2017 (6) e0178926
DETECTION / DIAGNOSIS
- High Resolution Melting as a rapid, reliable, accurate and cost-effective emerging tool for genotyping pathogenic bacteria and enhancing molecular epidemiological surveillance: a comprehensive review of the literature.
Tamburro M et al. Annali di igiene : medicina preventiva e di comunita (4) 293-316 - Diagnostics for neonatal sepsis: Current approaches and future directions.
Tam Pui-YingIroh et al. Pediatric research 2017 Jun - Next generation sequencing-based multigene panel for high throughput detection of food-borne pathogens.
Ferrario Chiara et al. International journal of food microbiology 2017 May 20-29 - Comparison of molecular serotyping approaches of Streptococcus agalactiae from genomic sequences.
Kapatai Georgia et al. BMC genomics 2017 Jun (1) 429 - Rapid identification of different Escherichia coli ST131 clades.
Matsumura Yasufumi et al. Antimicrobial agents and chemotherapy 2017 Jun - Influence of Antibiotics on the Detection of Bacteria by Culture-Based and Culture-Independent Diagnostic Tests in Patients Hospitalized With Community-Acquired Pneumonia.
Harris Aaron M et al. Open forum infectious diseases 2017 (1) ofx014 - Utility of 16S rRNA PCR performed on clinical specimens in patient management.
Akram A et al. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2017 Apr 144-149
- Evaluation of Pneumococcal Load in Blood by Polymerase Chain Reaction for the Diagnosis of Pneumococcal Pneumonia in Young Children in the PERCH Study.
Deloria Knoll Maria et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Jun (suppl_3) S357-S367 - Detection of Pneumococcal DNA in Blood by Polymerase Chain Reaction for Diagnosing Pneumococcal Pneumonia in Young Children From Low- and Middle-Income Countries.
Morpeth Susan C et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Jun (suppl_3) S347-S356 - Colonization Density of the Upper Respiratory Tract as a Predictor of Pneumonia-Haemophilus influenzae, Moraxella catarrhalis, Staphylococcus aureus, and Pneumocystis jirovecii.
Park Daniel E et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Jun (suppl_3) S328-S336 - Limited Utility of Polymerase Chain Reaction in Induced Sputum Specimens for Determining the Causes of Childhood Pneumonia in Resource-Poor Settings: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study.
Thea Donald M et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Jun (suppl_3) S289-S300 - Detection and molecular characterisation of a diagnosis escape variant associated with occult hepatitis B virus in Brazil.
Almeida Ricardo Wagner de et al. Memorias do Instituto Oswaldo Cruz 2017 Jul (7) 485-491 - Laboratory Diagnosis of Chikungunya Virus Infections and Commercial Sources for Diagnostic Assays.
Johnson Barbara W et al. The Journal of infectious diseases 2016 Dec (suppl 5) S471-S474 - Monitoring of Newcastle disease virus in environmental samples.
Turmagambetova Aizhan S et al. Archives of virology 2017 Jun - Is Higher Viral Load in the Upper Respiratory Tract Associated With Severe Pneumonia? Findings From the PERCH Study.
Feikin Daniel R et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Jun (suppl_3) S337-S346 - Viral Encephalitis of Unknown Cause: Current Perspective and Recent Advances.
Kennedy Peter G E et al. Viruses 2017 Jun (6) - Identification of piroplasm infection in questing ticks by RLB: a broad range extension of tick-borne piroplasm in China?
Omar Abdallah Mirza et al. Parasitology research 2016 May (5) 2035-44 - Malaria Surveillance - United States, 2014.
Mace Kimberly E et al. Morbidity and mortality weekly report. Surveillance summaries (Washington, D.C. : 2002) 2017 May (12) 1-24 - Fast and robust single PCR for Plasmodium sporozoite detection in mosquitoes using the cytochrome oxidase I gene.
Echeverry Diego F et al. Malaria journal 2017 May (1) 230 - Molecular diagnosis and characterization of Cryptosporidium spp. in turkeys and chickens in Germany reveals evidence for previously undetected parasite species.
Helmy Yosra A et al. PloS one 2017 (6) e0177150
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
- Comparison of Control of Clostridium difficile Infection in Six English Hospitals Using Whole-Genome Sequencing.
Eyre David W et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 May - Outbreaks in the neonatal ICU: a review of the literature.
Johnson Julia et al. Current opinion in infectious diseases 2017 Jun - Mycoplasma hominis Infections Transmitted through Amniotic Tissue Product.
Novosad Shannon A et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 May
HOST-MICROBE INTERACTIONS
- Overview of human genetic susceptibility to malaria: From parasitemia control to severe disease.
Marquet Sandrine et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Jun - Impact of viral and host DNA methylations on HPV16-related cervical cancer pathogenesis.
Sen Shrinka et al. Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2017 May (5) 1010428317699799 - Changes in vaginal community state types reflect major shifts in the microbiome.
Brooks J Paul et al. Microbial ecology in health and disease 2017 (1) 1303265
Note:
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Public Health Genomics to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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