Advanced Molecular Detection Clips
About Advanced Molecular Detection Clips
Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. Special emphasis is given to the use of next-generation genetic sequencing in infectious disease public health surveillance, investigation, and development of new diagnostics and interventions. The collection is not comprehensive but aims to capture highlights, while surveying a wide range of topics. CDC-authored articles are flagged. Items marked I&E address aspects of implementation or evaluation in clinical or public health practice.
Advanced Molecular Detection Clips Content
NEWS
- Rapid microbiology testing technology and the role of antimicrobial stewardship programs
Brock J. Infectious Disease News, Mar 2016. - Warren, Enzi Bill Seeks to Tighten Protections for Genetic Information in Research
Ray T. GenomeWeb, Apr 7, 2016. - NGS-Based Pipeline Used to Develop Improved Parasitic Worm MDx
Johnson M. GenomeWeb, Apr 6, 2016. - Microbes Meet Cancer
Yandell K. The Scientist, Apr 1, 2016.
EVENTS / TRAINING / WEB RESOURCES
- Specialized database with unique search interface added to Zika virus resource page
(web resource) NCBI, Mar 31, 2016.
POLICY
- Emerging resistance, new antimicrobial agents…but no tests! The Challenge of Antimicrobial Susceptibility Testing in the Current U.S. Regulatory Landscape.
Humphries R M et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Mar
CONCEPTS / COMMENTS
- The implications of whole-genome sequencing in the control of tuberculosis.
Lee Robyn S et al. Therapeutic advances in infectious disease 2016 Apr (2) 47-62 - The Role of MicroRNA in Pathogenesis and as Markers of HCV Chronic Infection.
Lee Chang Ho et al. Current drug targets 2016 Apr - Host-directed therapies for infectious diseases: current status, recent progress, and future prospects.
Zumla Alimuddin et al. The Lancet. Infectious diseases 2016 Apr (4) e47-63 - What Is Speciation?
Shapiro B Jesse et al. PLoS genetics 2016 Mar (3) e1005860
METHODS / TOOLS
- Reconstructing transmission trees for communicable diseases using densely sampled genetic data.
Worby Colin J et al. The annals of applied statistics 2016 Mar (1) 395-417 - The US Culture Collection Network lays the foundation for progress in preservation of valuable microbial resources.
McCluskey Kevin et al. Phytopathology 2016 Mar
EVOLUTION / ECOLOGY / POPULATIONS
- Tracing isolates from domestic human Campylobacter jejuni infections to chicken slaughter batches and swimming water using whole-genome multilocus sequence typing.
Kovanen Sara et al. International journal of food microbiology 2016 Mar 53-60 - Limited Dissemination of Extended-Spectrum β-Lactamase- and Plasmid-Encoded AmpC-Producing Escherichia coli from Food and Farm Animals, Sweden.
Börjesson Stefan et al. Emerging infectious diseases 2016 Apr (4) 634-40 - The spread of hepatitis C virus genotype 1a in North America: a retrospective phylogenetic study.
Joy Jeffrey B et al. The Lancet. Infectious diseases 2016 Mar - Global genomic diversity of human papillomavirus type 11 (HPV11) based on 433 isolates and 78 complete genome sequences.
Jelen Mateja M et al. Journal of virology 2016 Mar - S1 gene-based phylogeny of infectious bronchitis virus: An attempt to harmonize virus classification.
Valastro Viviana et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Apr 349-64 - Complexity of Infection and Genetic Diversity in Cambodian Plasmodium vivax.
Friedrich Lindsey R et al. PLoS neglected tropical diseases 2016 Mar (3) e0004526 - Population Structure in Naegleria fowleri as Revealed by Microsatellite Markers.
Coupat-Goutaland Bénédicte et al. PloS one 2016 (4) e0152434 - Definitive Hosts of Versteria Tapeworms (Cestoda: Taeniidae) Causing Fatal Infection in North America.
Lee Laura M et al. Emerging infectious diseases 2016 Apr (4) 707-10
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
- Emergence of a daptomycin-non-susceptible Enterococcus faecium strain that encodes mutations in DNA repair genes after high-dose daptomycin therapy.
Matono Takashi et al. BMC research notes 2016 (1) 197 - Genome sequencing of a virulent avian Pasteurella multocida strain GX-Pm reveals the candidate genes involved in the pathogenesis.
Yu Chengjie et al. Research in veterinary science 2016 Apr 23-7 - HUMAN TUBERCULOSIS II. M. tuberculosis mechanisms of genetic and phenotypic resistance to anti-tuberculosis drugs.
Sgaragli Giampietro et al. Current medicinal chemistry 2016 Apr
DETECTION / DIAGNOSIS
- Recent and emerging innovations in Salmonella detection: a food and environmental perspective.
Bell Rebecca L et al. Microbial biotechnology 2016 Apr - Antibiotic Resistome: Improving Detection and Quantification Accuracy for Comparative Metagenomics.
Elbehery Ali H A et al. Omics : a journal of integrative biology 2016 Mar - Rapid Antimicrobial Susceptibility Testing of Bacillus anthracis, Yersinia pestis, and Burkholderia pseudomallei Using Laser Light Scattering Technology.
Bugrysheva Julia V et al. Journal of clinical microbiology 2016 Mar - Rapid investigation of cases and clusters of Legionnaires' Disease in England and Wales using direct molecular typing.
Mentasti Massimo et al. Journal of medical microbiology 2016 Apr - A pan-dengue virus reverse transcription-insulated isothermal polymerase chain reaction (RT-iiPCR) assay intended for point-of-need diagnosis of dengue infection using POCKITTM Nucleic Acid Analyzer.
Go Yun Young et al. Journal of clinical microbiology 2016 Mar - From synthetic DNA to PCR product: detection of fungal infections using SERS.
Mabbott Samuel et al. Faraday discussions 2016 Apr - Improved PCR-Based Detection of Soil Transmitted Helminth Infections Using a Next-Generation Sequencing Approach to Assay Design.
Pilotte Nils et al. PLoS neglected tropical diseases 2016 Mar (3) e0004578
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
- Transmission of Middle East Respiratory Syndrome Coronavirus Infections in Healthcare Settings, Abu Dhabi.
Hunter Jennifer C et al. Emerging infectious diseases 2016 Apr (4) 647-56 - Typing of Pneumocystis jirovecii by multilocus sequencing: evidence of outbreak?
Depypere M et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2016 Apr
ANTIMICROBIALS / VACCINES / INTERVENTIONS
- Fecal microbial transplants reduce antibiotic-resistant genes in patients with recurrent Clostridium difficile infection.
Millan Braden et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Mar - Autoimmune variant PTPN22 C1858T is associated with impaired responses to influenza virus vaccination.
Crabtree Juliet N et al. The Journal of infectious diseases 2016 Mar - A perfect storm: Impact of genomic variation and serial vaccination on low influenza vaccine effectiveness during the 2014-15 season.
Skowronski Danuta M et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Mar
- Next-generation nanoantibacterial tools developed from peptides.
Vries Renko de et al. Nanomedicine (London, England) 2015 May (10) 1643-61
HOST-MICROBE INTERACTIONS
- Expression Analysis Highlights AXL as a Candidate Zika Virus Entry Receptor in Neural Stem Cells.
Nowakowski Tomasz J et al. Cell stem cell 2016 Mar - HPV genotype distribution and anomalous association of HPV33 to cervical neoplastic lesions in San Luis Potosí, Mexico.
DelaRosa-Martínez Raúl et al. Infectious agents and cancer 2016 16 - IL18 Gene Variants Influence the Susceptibility to Chagas Disease.
Leon Rodriguez Daniel A et al. PLoS neglected tropical diseases 2016 Mar (3) e0004583
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