June 30 - July 7, 2016
Advanced Molecular Detection Clips
About Advanced Molecular Detection Clips
Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. Special emphasis is given to the use of next-generation genetic sequencing in infectious disease public health surveillance, investigation, and development of new diagnostics and interventions. The collection is not comprehensive but aims to capture highlights, while surveying a wide range of topics. CDC-authored articles are flagged. Items marked I&E address aspects of implementation or evaluation in clinical or public health practice.
Advanced Molecular Detection Clips Content
NEWS
- Bruker Releases Results From CDC Microbiology Collaboration
Bnoislawski A. GenomeWeb, Jun 24, 2016. - Sampling the world's microbiome
Harris J. PHG Foundation, Jun 22, 2016. - Tourists pick up antibiotic-resistance genes in just two days
Coghlan A. New Scientist, jun 24, 2016. - Whole Genome Sequencing: Cracking the Genetic Code for Foodborne Illness
FDA Consumer Update, Jun 24, 2016. - Vaccine Development Stands to Benefit From Results of New Human Immune System Sequencing Project
Anderson A. GenomeWeb, Jun 23, 2016. - Multiple Sclerosis Linked to Gut Microbe Shift
GenomeWeb, Jun 28, 2016. - FDA clears first test to detect specific genetic markers for certain antibiotic-resistant bacteria directly from clinical specimens
FDA, Jun 29, 2016. - Science academies blast US government’s planned research-ethics reforms
Reardon S. Nature, Jun 29, 2016. - A deadly, drug-resistant yeast infection is spreading around the world
Sun LH. Washington Post, Jun 29, 2016.
CONCEPTS / COMMENTS
- Goodbye genome paper, hello genome report: the increasing popularity of 'genome announcements' and their impact on science.
Smith David Roy et al. Briefings in functional genomics 2016 Jun - Avoiding Pandemic Fears in the Subway and Conquering the Platypus
Gonzalez A, et al. mSystems 1(3):e00050-16. - Raising standards in microbiome research
(editorial) Nat Microbiol, Jun 24, 2016.
METHODS / TOOLS
- A Universal Next-Generation Sequencing Protocol To Generate Noninfectious Barcoded cDNA Libraries from High-Containment RNA Viruses
Moser LA, et al. mSystems May/June 2016 1:e00039-15. - Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies
Song SJ, et al. mSystems May/June 2016 1:e00021-16. - A web application for sample size and power calculation in case-control microbiome studies.
Mattiello Federico et al. Bioinformatics (Oxford, England) 2016 Jul (13) 2038-40 - MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota.
Zhang Xu et al. Microbiome 2016 (1) 31 - 16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform.
Fouhy Fiona et al. BMC microbiology 2016 (1) 123
EVOLUTION / ECOLOGY / POPULATIONS
- Molecular Identification of Nontuberculous Mycobacteria in Humans in Zimbabwe Using 16S Ribosequencing.
Chin'ombe Nyasha et al. The open microbiology journal 2016 113-23 - Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax.
Hupalo Daniel N et al. Nature genetics 2016 Jun - Genomic analysis of local variation and recent evolution in Plasmodium vivax.
Pearson Richard D et al. Nature genetics 2016 Jun - Origins of the 2009 H1N1 influenza pandemic in swine in Mexico
Mena I, et al. eLife, Jun 28, 2016. - Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment
Hsu T, et al. mSystems May/June 2016 1:e00018-16. - Epidemiology and transmission characteristics of human adenovirus type 7 caused acute respiratory disease outbreak in military trainees in East China.
Cheng Jun et al. American journal of translational research 2016 (5) 2331-42 - A geospatial analysis of flies and the spread of antimicrobial resistant bacteria.
Schaumburg Frieder et al. International journal of medical microbiology : IJMM 2016 Jun
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
- Penicillin-Binding Protein Transpeptidase Signatures for Tracking and Predicting β-Lactam Resistance Levels in Streptococcus pneumoniae.
Li Yuan et al. mBio 2016 (3)
- Clinical and virological profiling of sporadic hepatitis E virus infection in China.
Wang Lin et al. The Journal of infection 2016 Jun - Plasmid Dynamics in KPC-Positive Klebsiella pneumoniae during Long-Term Patient Colonization.
Conlan Sean et al. mBio 2016 (3)
DETECTION / DIAGNOSIS
- Superiority of West Nile Virus RNA detection in whole blood for diagnosis of acute infection.
Lustig Yaniv et al. Journal of clinical microbiology 2016 Jun - Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system.
Salzberg Steven L et al. Neurology® neuroimmunology & neuroinflammation 2016 Aug (4) e251 - Optical imaging of bacterial infections.
Mills Bethany et al. Clinical and translational imaging 163-174 - Rapid molecular diagnosis of infective aortic valve endocarditis caused by Coxiella burnetti.
Kumpf Oliver et al. Infection 2016 Jun - Contribution of molecular tools for the diagnosis and epidemiology of fungal chronic rhinosinusitis.
Comacle Pauline et al. Medical mycology 2016 Jun - Multicenter Evaluation of the BioFire FilmArray Meningitis Encephalitis Panel for the Detection of Bacteria, Viruses and Yeast in Cerebrospinal Fluid Specimens.
Leber Amy L et al. Journal of clinical microbiology 2016 Jun - High Incidence of Chikungunya Virus and Frequency of Viremic Blood Donations during Epidemic, Puerto Rico, USA, 2014.
Simmons Graham et al. Emerging infectious diseases 2016 Jul (7) 1221-8 - Identification and typing of the emerging pathogen Candida auris by matrix-assisted laser desorption ionisation time of flight mass spectrometry.
Girard Victoria et al. Mycoses 2016 Jun - Zoonotic transmission of two new strains of Human T Lymphotropic Virus type 4 in hunters bitten by a gorilla in Central Africa.
Richard Léa et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Jun
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
- Whole genome sequencing improved case ascertainment in an outbreak of Shiga toxin-producing Escherichia coli O157 associated with raw drinking milk.
Butcher H et al. Epidemiology and infection 2016 Mar 1-12 - Confirmation of a Campylobacteriosis Outbreak Associated with Chicken Liver Pâté Using PFGE and WGS.
Lahti E et al. Zoonoses and public health 2016 Jun - Identification of Infantile Diarrhea Caused by Breast Milk-Transmitted Staphylococcus aureus Infection.
Chen Zhong et al. Current microbiology 2016 Jun - Genomic Analysis and Comparison of Two Gonorrhea Outbreaks.
Didelot Xavier et al. mBio 2016 (3)
ANTIMICROBIALS / VACCINES / INTERVENTIONS
- Unique safety issues associated with virus-vectored vaccines: Potential for and theoretical consequences of recombination with wild type virus strains.
Condit Richard C et al. Vaccine 2016 Jun - Understanding the mechanisms of faecal microbiota transplantation.
Khoruts Alexander et al. Nature reviews. Gastroenterology & hepatology 2016 Jun - Temporal Changes in BEXSERO® Antigen Sequence Type Associated with Genetic Lineages of Neisseria meningitidis over a 15-Year Period in Western Australia.
Mowlaboccus Shakeel et al. PloS one (6) e0158315
HOST-MICROBE INTERACTIONS
- Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota.
Lauder Abigail P et al. Microbiome 2016 (1) 29 - Reduced diversity and altered composition of the gut microbiome in individuals with myalgic encephalomyelitis/chronic fatigue syndrome.
Giloteaux Ludovic et al. Microbiome 2016 (1) 30 - Phenylketonuria and Gut Microbiota: A Controlled Study Based on Next-Generation Sequencing.
Pinheiro de Oliveira Felipe et al. PloS one 2016 (6) e0157513 - Kawasaki disease: A matter of innate immunity.
Hara Toshiro et al. Clinical and experimental immunology 2016 Jun - The microbiota of breast tissue and its association with tumours.
Urbaniak Camilla et al. Applied and environmental microbiology 2016 Jun - Kinetic Analysis of Biomarkers in a Cohort of US Patients With Ebola Virus Disease.
McElroy Anita K et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Jun
Note: indicates that at least one CDC-affiliated author; 
indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Public Health Genomics to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Public Health Genomics to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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