Genomics|Update|Infectious Diseases ► Evolution, Ecology, Pathogenicity, Populations

Genomics|Update|Infectious Diseases

Volume 34  Number 2  January 15-22, 2015

Evolution, Ecology, Pathogenicity, Populations

Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains
Salipante SJ, et al. Genome Res 2015; 25: 119-128.

Comment:
Demystifying Escherichia coli pathovars
Baker KS. Nat Rev Microbiol 2015; 13: 5.

Molecular epidemiology of OXA-48-producing Klebsiella pneumoniae in France
Liapis E, et al. Clin Microbiol Infect 2014; 20(12): O1121–O1123.

Genomic epidemiology of Klebsiella pneumoniae in Italy and novel insights into the origin and global evolution of its resistance to carbapenem antibiotics
Gaiarsa S, et al. Antimicrob Agents Chemother 2015; 59(1): 389-396.

Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype enteritidis
Deng X, et al. J Clin Microbiol 2015; 53(1): 212-218.

Trends in serotype distribution and antimicrobial susceptibility in Salmonella enterica Isolates from humans in Belgium, 2009 to 2013
Ceyssens PJ, et al. Antimicrob Agents Chemother 2015; 59(1): 544-552.

Epidemiological analysis of the dynamic and diversity of Salmonella spp. in five German pig production clusters using pheno- and genotyping methods: An exploratory study
Niemann J, et al. Vet Microbiol, Dec 23, 2014.

Clinical and molecular epidemiology of Staphylococcus argenteus infections in Thailand
Thaipadungpanit J, et al. J Clin Microbiol, Jan 7, 2015.

Draft genome sequence of Legionella pneumophila D-5864, a serogroup 6 strain
Morrison SS, et al. Genome Announc 2015;  3(1): e01379-14.

Investigations of Mycoplasma pneumoniae infections in the United States: trends in molecular typing and macrolide resistance from 2006 to 2013
Diaz MH, et al. J Clin Microbiol 2015; 53(1): 124-130.

Whole-genome phylogenomic heterogeneity of Neisseria gonorrhoeae isolates with decreased cephalosporin susceptibility collected in Canada between 1989 and 2013
Demczuk W, et al. J Clin Microbiol 2015; 53(1): 191-200.

Whole-genome sequencing confirms that Burkholderia pseudomallei multilocus sequence types common to both Cambodia and Australia are due to homoplasy
De Smet B, et al. J Clin Microbiol 2015; 53(1): 323-326.

Whole-genome sequencing of Burkholderia pseudomallei Isolates from an unusual melioidosis case identifies a polyclonal infection with the same multilocus sequence type
Price EP, et al. J Clin Microbiol 2015; 53(1): 282-286.

Orientia tsutsugamushi, agent of scrub typhus, displays a single metapopulation with maintenance of ancestral haplotypes throughout continental South East Asia
Wongprompitak P, et al. Infect Genet Evol, Jan 8, 2015.

Genome sequence of enterovirus D68 from St. Louis, Missouri, USA
Wylie KM, et al. Emerg Infect Dis, Jan 2015.

Genetic diversity of Enterovirus A71, India
Saxena VK, et al. Emerg Infect Dis, Jan 2015.