Infectious Diseases
Methods
A phylogeny-based sampling strategy and power calculator informs genome-wide associations study design for microbial pathogens![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Farhat MR, et al. Genome Medicine 2014, 6:101.
Farhat MR, et al. Genome Medicine 2014, 6:101.
BAsE-Seq: a method for obtaining long viral haplotypes from short sequence reads![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Hong LZ, et al. Genome Biology 2014, 15:517.
Hong LZ, et al. Genome Biology 2014, 15:517.
Characterizing the genetic basis of bacterial phenotypes using genome-wide association studies: a new direction for bacteriology
[PDF 432.40 KB]![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Timothy D Read and Ruth C Massey Genome Medicine 2014, 6:109
Timothy D Read and Ruth C Massey Genome Medicine 2014, 6:109
Clinical laboratory response to a mock outbreak of invasive bacterial infections: a preparedness study![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Olsen RJ, et al. J Clin Microbiol 2014; 52(12): 4210-4216.
Olsen RJ, et al. J Clin Microbiol 2014; 52(12): 4210-4216.
Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Matranga CB, et al. Genome Biol 2014 Nov 18;15(11):519.
Matranga CB, et al. Genome Biol 2014 Nov 18;15(11):519.
Equipment-free incubation of recombinase polymerase amplification reactions using body heat![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Crannell ZA, et al. PLoS ONE 9(11): e112146.
Crannell ZA, et al. PLoS ONE 9(11): e112146.
Comment:
Rice U team shows feasibility of body heat-activated isothermal amplification for low-resource MDx![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Johnson M. GenomeWeb, Nov 18, 2014.
Rice U team shows feasibility of body heat-activated isothermal amplification for low-resource MDx
Johnson M. GenomeWeb, Nov 18, 2014.
Evaluation of viral genome assembly and diversity estimation in deep metagenomes![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Aguirre de Carcer D, et al. BMC Genomics 2014, 15:989.
Aguirre de Carcer D, et al. BMC Genomics 2014, 15:989.
Protein microarrays for parasite antigen discovery![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Driguez P, et al. Methods Mol Biol 2015;1201:221-33.
Driguez P, et al. Methods Mol Biol 2015;1201:221-33.
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Inouye M, et al. Genome Medicine 2014, 6:90.
Inouye M, et al. Genome Medicine 2014, 6:90.
Rapid core-genome alignment and visualization for thousands of intraspecific microbial genomes![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Treangen TJ, et al. Genome Medicine 2014, 15:524.
Treangen TJ, et al. Genome Medicine 2014, 15:524.
Unexpected cross-species contamination in genome sequencing projects![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Merchant S, et al. PeerJ 2:e675.
Merchant S, et al. PeerJ 2:e675.
Comment:
Researchers find sequences from contaminants within genomes housed in public databases![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
GenomeWeb, Nov 20, 2014.
Researchers find sequences from contaminants within genomes housed in public databases
GenomeWeb, Nov 20, 2014.
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