Increased diagnostic yield by reanalysis of data from a hearing loss gene panel

Yu Sun†,
Jiale Xiang†,
Yidong Liu†,
Sen Chen,
Jintao Yu,
Jiguang Peng,
Zijing Liu,
Lisha Chen,
Jun Sun,
Yun Yang,
Yaping Yang,
Yulin ZhouEmail author and
Zhiyu PengEmail author View ORCID ID profile

†Contributed equally

BMC Medical Genomics201912:76

https://doi.org/10.1186/s12920-019-0531-6

Received: 29 January 2019
Accepted: 14 May 2019
Published: 28 May 2019

Open Peer Review reports

Abstract

Background

Congenital hearing loss affects approximately 1–2 infants out of every 1000, with 50% of the cases resulting from genetic factors. Targeted gene panels have been widely used for genetic diagnosis of hearing loss. This study aims to reveal new diagnoses via reanalyzing historical data of a multigene panel, and exam the reasons for new diagnoses.

Methods

A total of 210 samples were enlisted, including clinical reports and sequencing data of patients with congenital/prelingual hearing loss who were referred to clinical genetic testing from October 2014 to June 2017. All variants listed on the original clinical reports were reinterpreted according to the standards and guidelines recommended by the American College of Medical Genetics and Genomics and the Association for Molecular Pathology (ACMG/AMP). Expanded analysis of raw data were performed in undiagnosed cases.

Results

Re-analysis resulted in nine new diagnoses, improving the overall diagnostic rate from 39 to 43%. New diagnoses were attributed to newly published clinical evidence in the literature, adoption of new interpretation guidelines and expanded analysis range.

Conclusion

This work demonstrates benefits of reanalysis of targeted gene panel data, indicating that periodical reanalysis should be performed in clinical practice.