Clinical application of a cancer genomic profiling assay to guide precision medicine decisions.

Eifert C1,1, Pantazi A1,1, Sun R1,1, Xu J1,2,1,2, Cingolani P1,1, Heyer J1,1, Russell M1,1, Lvova M1,1, Ring J1,1, Tse JY1,3,1,3, Lyle S1,4,1,4, Protopopov A1,1.

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Abstract

AIM:

Develop and apply a comprehensive and accurate next-generation sequencing based assay to help clinicians to match oncology patients to therapies.

MATERIALS & METHODS:

The performance of the CANCERPLEX® assay was assessed using DNA from well-characterized routine clinical formalin-fixed paraffin-embedded (FFPE) specimens and cell lines.

RESULTS:

The maximum sensitivity of the assay is 99.5% and its accuracy is virtually 100% for detecting somatic alterations with an allele fraction of as low as 10%. Clinically actionable variants were identified in 93% of patients (930 of 1000) who underwent testing.

CONCLUSION:

The test's capacity to determine all of the critical genetic changes, tumor mutation burden, microsatellite instability status and viral associations has important ramifications on clinical decision support strategies, including identification of patients who are likely to benefit from immune checkpoint blockage therapies.