Novel Nebovirus Genotype, France | CDC EID

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Volume 17, Number 6–June 2011
Dispatch
Possible Novel Nebovirus Genotype in Cattle, France
Jérôme Kaplon, Eric Guenau, Philippe Asdrubal, Pierre Pothier, and Katia Ambert-Balay
Author affiliations: Hôpital Universitaire de Dijon, Dijon, France (J. Kaplon, P. Pothier, K. Ambert-Balay); and Laboratoire Départemental de Côte d'Or, Dijon (E. Guenau, P. Asdrubal)


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Abstract
To determine if bovine caliciviruses circulate in France, we studied 456 fecal samples from diarrheic calves. We found a 20% prevalence of genogroup III noroviruses and a predominance of genotype III.2. Neboviruses, with a prevalence of 7%, were all related to the reference strain Bo/Nebraska/80/US, except for the strain Bo/DijonA216/06/FR, which could represent a novel genotype.

In the Caliciviridae family, genogroup III noroviruses (NoVsGIII) and neboviruses are associated with enteric disease in cattle (1), while genogroups I and II noroviruses (NoVsGI, NoVsGII) are a major cause of viral gastroenteritis in humans. Because of these common taxonomic and clinical features, molecular epidemiologic studies have been conducted on cattle worldwide to investigate possible zoonotic transmission. In France, little is known about the prevalence and genetic diversity of NoVsGIII and neboviruses circulating in cattle and possibly in humans.

The Study
We collected 456 fecal samples from diarrheic calves (mean age 9 days, median 8 days) from 415 farms in Burgundy, France, during December 2005 through September 2008 to screen for these viruses: 1 sample each was collected for 377 outbreaks; 2 and 3 samples were collected for 35 and 3 outbreaks, respectively. Reverse transcription PCR, targeting the 3′ end of the polymerase gene of NoVsGIII and neboviruses, was done with the QIAGEN One Step RT-PCR kit (QIAGEN, Hilden, Germany), according to the manufacturer's instructions, by using the primer sets CBECU-F/CBECU-R and NBU-F/NBU-R (2). The complete capsid gene of a selection of neboviruses was amplified by using NBcap-F3/NBcap-R primers (3). The amplified products of 532 bp, 549 bp, and 1,692 bp were sequenced by using the same primers.

In addition, we collected human stool samples in Burgundy and other regions of France during June 2006 through September 2008 and analyzed them for the presence of NoVsGIII and neboviruses. Samples included 60 samples from 21 gastroenteritis outbreaks of unknown etiology and 50 samples from 13 gastroenteritis outbreaks related to the consumption of oysters or water contaminated by human noroviruses and other enteric viruses.

Among the 456 samples from cattle, 114 (25%) were positive: 89 (20%) and 34 (7%) for NoVsGIII and neboviruses, respectively, with 9 (2%) samples infected by both viruses. These findings corresponded to 83 and 32 outbreaks positive for NoVsGIII and neboviruses, respectively, among which 9 presented co-infections in the same samples. The prevalence of NoVsGIII in similar studies range from 4% in the Netherlands (4) to 80% in Michigan, USA (5). These variations can be partly explained by differences in sampling strategies. The prevalence of neboviruses in our study was similar to that reported in other countries, e.g., 8% in the United Kingdom (6) and 9% in South Korea (7), but lower than in Ohio, USA (29%) (2). Furthermore, similar to our results, Smiley et al. (2) found a predominance of NoVsGIII compared to nebovirus, whereas in the United Kingdom and South Korea the prevalence of the 2 viruses was similar (6–9).

Sequencing and phylogenetic analyses of 89 NoVsGIII strains enabled them to be classified into 2 groups: 25 strains, representing 5% of the 456 specimens analyzed, were homologous to each other. They clustered with the genotype 1 reference strain Bo/Jena/80/DE on the gene fragment analyzed (Table 1, phylogenetic analyses not shown). The other 64 strains, 14% of the 456 samples, clustered with the genotype 2 reference strain Bo/Newbury2/76/UK (Newbury Agent [NA] 2). Partial polymerase sequences of a selection of these strains were submitted to the GenBank database under the accession nos. GU259570–GU259580 and FJ974131–FJ974136. The high number of sequences obtained in our study allowed us to highlight the existence of 2 distinct genotypes within NoVsGIII, as proposed by Ando et al. (10) and confirmed by others (2,5,9). Furthermore, the predominance of genotype 2 observed in our study is in keeping with numerous data (2,4,8,9). One study reported similar prevalence for the 2 genotypes, with a slight predominance of genotype 2 (5). All these results suggest that genotype 1 could be a minor circulating genotype and genotype 2 the main genotype worldwide.

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Novel Nebovirus Genotype, France | CDC EID


Suggested Citation for this Article
Kaplon J, Guenau E, Asdrubal P, Pothier P, Ambert-Balay K. Possible novel nebovirus genotype in cattle, France. Emerg Infect Dis [serial on the Internet]. 2011 Jun [date cited]. http://www.cdc.gov/EID/content/17/6/1120.htm


DOI: 10.3201/eid1706.100038


Comments to the Authors
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Katia Ambert-Balay, Laboratoire de Virologie, CNR des Virus Entériques, CHU Dijon, 2 Rue Angélique Ducoudray, BP 37013, 21070 Dijon, France; email: katia.balay@chu-dijon.fr