Genomics|Update|Infectious Diseases ► Methods

Genomics|Update|Infectious Diseases

Volume 34  Number 22  June 4-11, 2015

Methods

Inferring horizontal gene transfer.
Ravenhall M et al. PLoS Comput. Biol. 2015 May (5) e1004095

Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences.
Coll F et al. Genome Med 2015 (1) 51

Evaluation of convenient pretreatment protocols for RNA virus metagenomics in serum and tissue samples.
Rosseel T et al. J. Virol. Methods 2015 May 26.

Building a pan-genome reference for a population.
Nguyen N et al. J. Comput. Biol. 2015 May (5) 387-401

Development of a nucleic acid extraction procedure for simultaneous recovery of DNA and RNA from diverse microbes in water.
Hill VR et al. Pathogens 2015 (2) 335-54 (CDC Author)

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing.
Berlin K et al. Nat. Biotechnol. 2015 May 25.

Evolution of tRNA repertoires in Bacillus inferred with OrthoAlign.
Tremblay-Savard O et al. Mol. Biol. Evol. 2015 Jun (6) 1643-56

Phylodynamic inference with kernel ABC and its application to HIV epidemiology.
Poon Art FY et al. Mol. Biol. Evol. 2015 May 25.

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis.
Benavente ED et al. BMC Bioinformatics 2015 155

MANTIS: an R package that simulates multilocus models of pathogen evolution.
Lourenço J et al. BMC Bioinformatics 2015 176