Genomics|Update|Infectious Diseases ► Evolution/ Ecology/ Populations

Genomics|Update|Infectious Diseases

Volume 35  Number 10  September 3-17, 2015

Evolution/ Ecology/ Populations

A Comparison between transcriptome sequencing and 16S metagenomics for detection of bacterial pathogens in wildlife.
Razzauti M et al. PLoS Negl Trop Dis 2015 Aug (8) e0003929

Bacillus anthracis diversity and geographic potential across Nigeria, Cameroon and Chad: Further support of a novel West African lineage.
Blackburn JK et al. PLoS Negl Trop Dis 2015 Aug (8) e0003931

The ecology of microscopic life in household dust.
BarberÃA et al. Proc. Biol. Sci. 2015 Sep 7. (1814) 

Exploring genomic, geographic and virulence interactions among epidemic and non-epidemic St. Louis encephalitis virus (flavivirus) strains.
Diaz LA et al. PLoS ONE 2015 (8) e0136316

An integrative analysis of foot-and-mouth disease virus carriers in Vietnam achieved through targeted surveillance and molecular epidemiology.
de Carvalho FHC et al. Transbound Emerg Dis 2015 Aug 24.

Ebolavirus is evolving but not changing: No evidence for functional change in EBOV from 1976 to the 2014 outbreak.
Olabode AS et al. Virology 2015 Aug 202-7

Molecular epidemiological analysis of Saffold cardiovirus genotype 3 from upper respiratory infection patients in Taiwan.
Lin Tsuey-Li et al. J. Clin. Virol. 2015 Sep 7-13

Multiple-locus variable-number tandem repeat analysis of Leptospira interrogans and Leptospira borgpetersenii isolated from small feral and wild mammals in East Asia.
Koizumi N et al. Infect. Genet. Evol. 2015 Aug 18.

Enteropathogenic and enteroaggregative E. coli in stools of children with acute gastroenteritis in Davidson County, Tennessee.
Foster MA et al. Diagn. Microbiol. Infect. Dis. 2015 Jul 26. (CDC Author)

Fourteen types of co-circulating recombinant enterovirus were associated with hand, foot, and mouth disease in children from Wenzhou, China.
Guo Wen-Ping et al. J. Clin. Virol. 2015 Sep 29-38

Haemophilus influenzae: using comparative genomics to accurately identify a highly recombinogenic human pathogen.
Price EP et al. BMC Genomics 2015 641

Swine and rabbits are the main reservoirs of hepatitis E virus in China: detection of HEV RNA in feces of farmed and wild animals.
Xia Junke et al. Arch. Virol. 2015 Aug 26.

Identification of bufavirus-1 and bufavirus-3 in feces of patients with acute diarrhea, China.
Huang Dou-Dou et al. Sci Rep 2015 13272

Spatio-temporal genetic structuring of Leishmania major in Tunisia by microsatellite analysis.
Harrabi M et al. PLoS Negl Trop Dis 2015 Aug (8) e0004017

Phylogenetic and geographic relationships of severe fever with thrombocytopenia syndrome virus in China, South Korea, and Japan.
Yoshikawa T et al. J. Infect. Dis. 2015 Sep 15. (6) 889-98

The rural-urban effect on spatial genetic structure of type II Toxoplasma gondii strains involved in human congenital toxoplasmosis, France, 2002-2009.
Ajzenberg D et al. Infect. Genet. Evol. 2015 Aug 22.

Complete genome sequences of two Bordetella hinzii strains isolated from humans.
Weigand MR et al. Genome Announc 2015 (4) (CDC Author)

Molecular epidemiology of oyster-related human noroviruses: Global genetic diversity and temporal-geographical distribution from 1983 to 2014.
Yu Y et al. Appl. Environ. Microbiol. 2015 Aug 28.

Isolation and molecular characterization of Acanthamoeba genotypes in recreational and domestic water sources from Jamaica, West Indies.
Todd CD et al. J Water Health 2015 Sep (3) 909-919

The diversity and geographical structure of Orientia tsutsugamushi strains from scrub typhus patients in Laos.
Phetsouvanh R et al. PLoS Negl Trop Dis 2015 Aug (8) e0004024

A new trend of genotype distribution of hepatitis B virus infection in southeast China (Fujian), 2006-2013.
Wei DH et al. Epidemiol. Infect. 2015 Oct (13) 2822-6