Infectious Diseases
Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
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Leading the way: driving the delivery of pathogen genomics into practice,
by Dr Sowmiya Moorthie, PHG Foundation, October 2014
Infectious disease threats - global issues requiring global solutions
, by Sobia Raza, PHG Foundation, Sep 29, (report on 7th Global Microbial Identifier (GMI) Meeting
)
A defining decade in DNA sequencing![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
McPherson JD. Nat Methods 2014; 11: 1003-1005.
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LABEL: fast and accurate lineage assignment with assessment of H5N1 and H9N2 influenza A hemagglutinins![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Shepard SS, et al. PLoS One. 2014;9(1):e86921.
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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Yu YW, et al. Microbiome 2014; 2:26.
Yu YW, et al. Microbiome 2014; 2:26.
MaxBin: Automated sorting through metagenomes
, e ScienceNews, Sep 30, 2014.
Application of Ion Torrent sequencing to the assessment of the effect of alkali ballast water treatment on microbial community diversity![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Fujimoto M, et al. PLoS ONE 2014; 9(9): e107534.
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Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Kuhn JH, et al. Viruses 2014; 6(9): 3663-3682.
Kuhn JH, et al. Viruses 2014; 6(9): 3663-3682.
Epidemiological and molecular features of norovirus infections in Italian children affected with acute gastroenteritis![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Medici MC, et al. Epidemiol Infect 2014; 142(11): 2326-2335.
Medici MC, et al. Epidemiol Infect 2014; 142(11): 2326-2335.
Phylogeography and molecular epidemiology of an epidemic strain of dengue virus type 1 in Sri Lanka![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Ocwieja KE, et al. Am J Trop Med Hyg 2014; 91(2):225-234.
Ocwieja KE, et al. Am J Trop Med Hyg 2014; 91(2):225-234.
Evidence of recombinant strains of porcine epidemic diarrhea virus, United States, 2013
Tian PF, et al. Emerg Infect Dis, Oct 2014.
Tian PF, et al. Emerg Infect Dis, Oct 2014.
Pathogenicity and genomic characterization of a pseudorabies virus variant isolated from Bartha-K61-vaccinated swine population in China![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Luo Y, et al. Vet Microbiol, Sep 22, 2014.
Luo Y, et al. Vet Microbiol, Sep 22, 2014.
Molecular analysis of single oocyst of Eimeria by whole genome amplification (WGA) based nested PCR![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Wang Y, et al. Exp Parasitol 2014;144:96-9.
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Real-time investigation of a Legionella pneumophila outbreak using whole genome sequencing![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Graham RM, et al. Epidemiol Infect 2014; 142(11): 2347-2351.
Graham RM, et al. Epidemiol Infect 2014; 142(11): 2347-2351.
Genotyping of Burkholderia mallei from an outbreak of glanders in Bahrain suggests multiple introduction events![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Scholz HC, et al. PLoS Negl Trop Dis 2014; 8(9): e3195.
Scholz HC, et al. PLoS Negl Trop Dis 2014; 8(9): e3195.
Norovirus genotypes implicated in two oyster-related illness outbreaks in Ireland![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Rajko-Nenow P, et al. Epidemiol Infect 2014;142(10):2096-104.
Rajko-Nenow P, et al. Epidemiol Infect 2014;142(10):2096-104.
The genome sequence of ectromelia virus Naval and Cornell isolates from outbreaks in North America![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Mavian C, et al. Virology 2014;462-463:218-26.
Mavian C, et al. Virology 2014;462-463:218-26.
Mixed triple: allied viruses in unique recent isolates of highly virulent type 2 bovine viral diarrhea virus detected by deep sequencing![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Jenckel M, et al. J Virol 2014;88(12):6983-92.
Jenckel M, et al. J Virol 2014;88(12):6983-92.
Molecular epidemiology of vancomycin-resistant enterococci isolated from non-tertiary-care and tertiary-care hospitals in Korea![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Jung MK, et al. Epidemiol Infect 2014; 142(11): 2372-2377.
Jung MK, et al. Epidemiol Infect 2014; 142(11): 2372-2377.
Association of antibiotics in infancy with early childhood obesity![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Bailey LC, et al. JAMA Pediatr, Sep 29, 2014
Bailey LC, et al. JAMA Pediatr, Sep 29, 2014
Etiologies for seizures around the time of vaccination![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
VerBeek NE, et al. Pediatr, Sep 15, 2014.
VerBeek NE, et al. Pediatr, Sep 15, 2014.
Most vaccination-onset epilepsy has genetic, structural cause
, by Anderson P., Medscape, Sep 24, 2014.
Membership and behavior of ultra-low-diversity pathogen communities present in the gut of humans during prolonged critical illness![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Zaborin A, et al. mBio 2014; 5(5): e01361-14.
Zaborin A, et al. mBio 2014; 5(5): e01361-14.
Cytomegalovirus alpha-chemokine genotypes are associated with clinical manifestations in children with congenital or postnatal infections![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Paradowska E, et al. Virology 2014 Aug;462-463:207-17.
Paradowska E, et al. Virology 2014 Aug;462-463:207-17.
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