Genomics|Update|Infectious Diseases ► Evolution/ Ecology/ Populations

Genomics|Update|Infectious Diseases

Volume 35  Number 1  July 2-9, 2015

Evolution/ Ecology/ Populations

Novel arenavirus isolates from Namaqua rock mice, Namibia, Southern Africa. 
Witkowski PT, Kallies R, Hoveka J, Auste B, Ithete NL, Soltys T, et al. Emerg Infect Dis, Jul 2015.

Distinct lineages of bufavirus in wild shrews and nonhuman primates. 
Sasaki M, Orba Y, Anindita PD, Ishii A, Ueno K, Hang'ombe BM, et al. Emerg Infect Dis, Jul 2015.

Characterization of 3 megabase-sized circular replicons from Vibrio cholerae [letter]. 
Okada K, Natakuathung W, Na-Ubol M, Roobthaisong A, Wongboot W, Maruyama F, et al. Emerg Infect Dis, Jul 2015.

Diversity of Bartonella spp. in bats, southern Vietnam [letter].
Anh PH, Van Cuong N, Son NT, Tue NT, Kosoy M, Woolhouse MEJ, et al. Emerg Infect Dis, Jul 2015. (CDC Author)

Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions.
Anstead CA et al. Nat Commun 2015 7344

Deep sequencing analysis of viral infection and evolution allows rapid and detailed characterization of viral mutant spectrum.
Isakov O et al. Bioinformatics 2015 Jul 1. (13) 2141-50

Phylodynamics of Enterovirus A71-associated hand, foot and mouth disease in Viet Nam.
Geoghegan JL et al. J. Virol. 2015 Jun 17. (CDC Author)

Filovirus RNA in fruit bats, China [letter]. 
He B, Feng Y, Zhang H, Xu Lin, Yang W, Zhang Y, et al. Emerg Infect Dis. 2015 Sep [date cited].

Phylogenetic analysis of Bunyamwera and Ngari viruses (family Bunyaviridae, genus Orthobunyavirus) isolated in Kenya.
Odhiambo C et al. Epidemiol. Infect. 2015 Jun 29. 1-7

A novel recombinant lineage's contribution to the outbreak of coxsackievirus A6-associated hand, foot and mouth disease in Shanghai, China, 2012-2013.
Feng X et al. Sci Rep 2015 11700

Full-genome sequencing as a basis for molecular epidemiology studies of bluetongue Virus in India.
Maan S et al. PLoS ONE 2015 (6) e0131257

Phylodynamics of H5N1 highly pathogenic avian influenza in Europe, 2005-2010: Potential for molecular surveillance of new outbreaks.
Alkhamis MA et al. Viruses 2015 (6) 3310-28

The mitochondrial genome of a Texas outbreak strain of the cattle tick, Rhipicephalus (Boophilus) microplus, derived from whole genome sequencing Pacific Biosciences and Illumina reads.
McCooke JK et al. Gene 2015 Jun 25.

Bacteriophages isolated from chicken meat and the horizontal transfer of antimicrobial resistance genes.
Shousha A et al. Appl. Environ. Microbiol. 2015 Jul 15. (14) 4600-6

Recombination analysis of herpes simplex virus 1 reveals a bias toward GC content and the inverted repeat regions.
Lee K et al. J. Virol. 2015 Jul 15. (14) 7214-23