Infectious Diseases
CDC information: Wholesome Soy Products, Inc. sprouts recall and investigation of human listeriosis cases
Recalled bean sprouts linked to 2 listeria deaths, 3 hospitalizations,
by Food Safety News Desk, Nov 8
Gut–brain link grabs neuroscientists,
by Sara Reardon, Nature News, Nov 12
Microbiome science threatened by contamination,
by Daniel Cressey, Nature News, Nov 12
Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution.
Astrid von Mentzer et al. Nature Genetics, November 10, 2014
Astrid von Mentzer et al. Nature Genetics, November 10, 2014
Genome sequence of enterovirus D68 from St. Louis, Missouri, USA
Wylie KM, et al. Emerg Infect Dis, Jan 2015.
Wylie KM, et al. Emerg Infect Dis, Jan 2015.
Deep sequencing identifies noncanonical editing of Ebola and Marburg virus RNAs in infected cells![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Rahman RS, et al. mBio 2014; 5(6): e02011-14.
Rahman RS, et al. mBio 2014; 5(6): e02011-14.
Comment:
Ebola, Marburg viruses edit genetic material during infection![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Medical Xpress, Nov 4, 2014.
Medical Xpress, Nov 4, 2014.
Delays hinder Ebola genomics.
Gretchen Vogel, Science, November 7, 2014
Gretchen Vogel, Science, November 7, 2014
Genotyping of Burkholderia mallei from an outbreak of glanders in Bahrain suggests multiple introduction events![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Scholz HC, et al. PLoS Negl Trop Dis 2014; 8(9): e3195.
Scholz HC, et al. PLoS Negl Trop Dis 2014; 8(9): e3195.
Comparative analyses of nonpathogenic, opportunistic, and totally pathogenic Mycobacteria reveal genomic and biochemical variabilities and highlight the survival attributes of Mycobacterium tuberculosis![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Rahman SA, et al. mBio 2014; 5(6): e02020-14.
Rahman SA, et al. mBio 2014; 5(6): e02020-14.
Molecular characterization of hepatitis B virus (HBV) strains circulating in the northern coast of the Persian Gulf and its comparison with worldwide distribution of HBV subgenotype D1![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Pourkarim MR, et al. J Med Virol 2014; 86(5): 745-757.
Pourkarim MR, et al. J Med Virol 2014; 86(5): 745-757.
Carbapenemase genes and genetic platforms in Gram-negative bacilli: Enterobacteriaceae, Pseudomonas and Acinetobacter species![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Diene SN, Rolain JM. Clin Microbiol Infect 2014; 20(9): 831–838.
Diene SN, Rolain JM. Clin Microbiol Infect 2014; 20(9): 831–838.
Detection of carbapenemases in Enterobacteriaceae: a challenge for diagnostic microbiological laboratories![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Hrabak J, et al. Clin Microbiol Infect 2014; 20(9): 839–853.
Hrabak J, et al. Clin Microbiol Infect 2014; 20(9): 839–853.
Phenotypic detection of carbapenemase-producing Enterobacteriaceae by use of matrix-assisted laser desorption ionization–time of flight mass spectrometry and the Carba NP Test![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Knox J, et al. J Clin Microbiol 2014; 52(11): 4075-4077.
Knox J, et al. J Clin Microbiol 2014; 52(11): 4075-4077.
The utility and public health implications of PCR and whole genome sequencing for the detection and investigation of an outbreak of Shiga toxin-producing Escherichia coli serogroup O26:H11![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Dallman TJ, et al. Epidemiol Infect, Oct 15, 2014.
Dallman TJ, et al. Epidemiol Infect, Oct 15, 2014.
Absence of patient-to-patient intrahospital transmission of Staphylococcus aureus as determined by whole-genome sequencing![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Long SW, et al. mBio 2014; 5(5): e01692-14.
Long SW, et al. mBio 2014; 5(5): e01692-14.
A parallel diagnostic accuracy study of three molecular panels for the detection of bacterial gastroenteritis![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Biswas JS, et al. Euro J Clin Microbiol Infect Dis 2014; 33(11): 2075-2081.
Biswas JS, et al. Euro J Clin Microbiol Infect Dis 2014; 33(11): 2075-2081.
Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Eppinger M, et al. mBio 2014; 5(5): e01721-14.
Eppinger M, et al. mBio 2014; 5(5): e01721-14.
Tracking a tuberculosis outbreak over 21 years: strain-specific single nucleotide polymorphism-typing combined with targeted whole genome sequencing![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Stucki D, et al. J Infect Dis, Oct 30, 2014.
Stucki D, et al. J Infect Dis, Oct 30, 2014.
Susceptibility to Campylobacter infection is associated with the species composition of the human fecal microbiota![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Dicksved J, et al. mBio 2014; 5(5): e01212-14.
Dicksved J, et al. mBio 2014; 5(5): e01212-14.
Variation at HLA-DRB1 is associated with resistance to enteric fever.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Sarah J Dunstan et al. Nature Genetics, November 10, 2014
Sarah J Dunstan et al. Nature Genetics, November 10, 2014
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